Database search tools
the GPM (Global Proteome Machine) – search engine for MS/MS data
Matrix Science - search engine for peptide mass fingerprint data and MS/MS data
Prowl – peptide mass fingerprint search engine
ProteinProspector - peptide mass fingerprint search engine
Aldente - peptide mass fingerprint search engine
Expasy Molecular Biology Server - suite of proteomics tools FASTA Sequence Comparison
PEAKS software used for the analysis of peptide mass spectrometry data
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